Test Menu - Cancer Genomics

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LIS - Code Test Name Test Methodology Specimen Type Container Volume Transport/ Temperature TAT Cut off Test Requistion form Status/ Remarks/comments Clinical use Cancer Type Test component
2114 ColoComprehensive Fragment Length And Next Generation Sequencing (NGS) Tumour FFPE block Plastic Box or Bag Room Temperature 12 days MSI+BRAF+KRAS+NRAS 1. Prognosis (5 yr. survival) 2. To suspect for Lynch syndrome. 2. Patient eligibility for Cetuximab/ Panitumumab, Vemurafenib. Colon Cancer OncoCEPT Solid (DNA)+ MSI
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, shipped with cool pack
Whole Blood in EDTA (for MSI testing) 4ml Room temp, temperature should not exceed 30'c
G2195 IHC, ER-PR & Her2 By IHC Immunohistochemistry (IHC) Tumour FFPE block Plastic Box or Bag Room Temperature  5 days Immunohistochemistry of ER, PR and Her2 Classification of tumor Breast
T2413 HER2 By FISH FISH Tumour FFPE block Plastic Box or Bag Room Temperature 7 days Her2 Classification of tumor
T3901 HER2 By Digital PCR Digital PCR Tumor FFPE Block Plastic Box or Bag Room Temperature 7 days Her2 Classification of tumor
T2021 BRCA1&2 By NGS - BRCA1&2 Next Generation Sequencing (NGS) Whole Blood EDTA Purple / Lavender 4ml 0-4C 30 days BRCA1/2 1. To confirm HBOC syndrome. 2. Ovarian/ Prostate cancer patient's eligibility for Olaparib. BRCA1/2 by NGS
0-4C BRCA1/2 by NGS
2113 Somatic BRCA 1&2 Next Generation Sequencing (NGS) Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack 1. Ovarian/ Prostate cancer patient's eligibility for Olaparib. OncoCEPT Solid Comprehensive
Tumor FFPE Block Plastic Box or Bag Room Temperature
2101 OncoCEPT - Solid Next Generation Sequencing (NGS) Tumor FFPE Block Plastic Box or Bag Room Temperature 12 days Mutations: ESR1, PIK3CA, PTEN. Copy number variation: CCND1. To choose optimal treatment for ER+ CA breast, not responding to hormone therapy.
NGS Sequencing Fresh Tissue RNAlater (contact lab for the tube) 0-4C, shipped with Cool Pack
T3015 EGFR By NGS Next Generation Sequencing (NGS) Tumor FFPE Block Plastic Box or Bag Room Temperature 12 days EGFR All Exons Eligibility of patient for TKIs Lungs OncoCEPT Solid (DNA)
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, shipped with Cool Pack
2215 EGFR T790M Digital PCR Whole Blood Streck Tube Roche Tube (contact lab for the tube) 10.0 ml 0-4C 5 days EGFR T790 Liquid Biopsy Eligibility of patient for TKIs
1135 OncoCEPT-Liquid Next Generation Sequencing (NGS) Whole Blood Streck Tube Roche Tube (contact lab for the tube) 10.0 ml 0-4C 12 days ALK, BRAF, EGFR, ERBB2, KRAS, MAP2K1, MET, NRAS, PIK3CA, ROS1, and TP53 Eligibility of patient for TKIs/ Resistance to TKIs
G2408 HPV 16/18 Real time PCR Cervical swab/swab VTM Falcon Tube Room Temperature 2 days HPV 16/18 Cervical cancer diagnosis Cervical cancer
T2560 HPV-high risk strains Next Generation Sequencing (NGS) Cervical Swab VTM Falcon Tube Room Temperature 10 days HPV-High Risk Strains Cervical cancer diagnosis and prognosis of oral cancer.
2101 OncoCEPT Solid Comprehensive Next Generation Sequencing (NGS) Tumor FFPE Block Plastic Box or Bag Room Temperature 15 days For specific cases, especially non lung, non breast, CUP tumors.
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2103 KRAS+NRAS+BRAF Oncocept Solid - Onco.colon NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature 12 days Eligibility of patient for Cetuximab, Panitumumab and anti BRAF mAb OncoCEPT Solid (DNA)
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2104 GIST Panel Oncocept Solid - Onco.GIST NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature 12 days Eligibility of patients for targeted therapy. OncoCEPT Solid (DNA)
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2106 Thyroid Cancer Panel OncoCEPT Solid - Onco.Thyroid NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature Eligibility of patient for targeted therapy. OncoCEPT Solid
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2107 Oncocept Solid Breast Cancer Panel (ER+Her2-) - Onco.Breast NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature Eligibility of patients for targeted therapy. OncoCEPT Solid
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2110 HRR Gene Panel NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature Eligibility of patient for Olaparib and screening of high risk family members. OncoCEPT Solid Comprehensive
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2108 Oncocept Solid Single Gene - Onco.single NGS Sequencing Tumor FFPE Block Plastic Box or Bag Room Temperature OncoCEPT Solid (DNA)
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
2111 Microsatellite Instability - Onco.MSI Tumor FFPE Block Plastic Box or Bag 5.0 ml Room Temperature 7 days Eligibility of patients for Immunotherapy.
Fresh Tissue RNAlater (contact lab for the tube) 0-4C, Shipped with Cool Pack
G2352 MMR IHC PANEL For MSI IHC Tumor FFPE Block Plastic Box or Bag Room Temperature Eligibility of patients for Immunotherapy.
Formalin Fixed Tissue
T4482 IHC Marker PDL1 IHC Tumor FFPE Block Plastic Box or Bag Room Temperature 4 days
T4594 ORION Whole Exome/ Comprehensive Cancer/ Inherited Cancer Germline Next Generation Sequencing (NGS) Whole Blood in EDTA 5ml 0-4C, Shipped with Cool Pack 30 days MLH1, MSH2, MSH6, PMS2 To Confirm Lynch Syndrome Inherited Cancers

Accreditations

The above accreditations have been granted to NEUBERG SUPRATECH REFERENCE LABORATORIES PRIVATE LIMITED (NSRL). The Neuberg Center for Genomic Medicine (NCGM) is affiliated to NSRL.